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1

Control of glycolytic flux in Zymomonas mobilis by glucose 6-phosphate dehydrogenase activity

Jacky L. Snoep, Nico Arfman, Lorraine P. Yomano, Hans V. Westerhoff, Tyrrell Conway, Lonnie O'Neal Ingram

Journal:

Biotechnology and Bioengineering

Year:

1996

Language:

english

File:

PDF, 818 KB

english, 1996

2

Attractive models: how to make the silicon cell relevant and dynamic

Hans V. Westerhoff, Frank Bruggeman, Jan-Hendrik S. Hofmeyr, Jacky L. Snoep

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 73 KB

english, 2003

3

Putting Intentions into Cell Biochemistry: An Artificial Intelligence Perspective

CATHOLIJN M. JONKER, JACKY L. SNOEP, JAN TREUR, HANS V. WESTERHOFF, WOUTER C.A. WIJNGAARDS

Journal:

Journal of Theoretical Biology

Year:

2002

Language:

english

File:

PDF, 471 KB

english, 2002

4

Selectivity in Overlapping MAP Kinase Cascades

OSCAR J.G. SOMSEN, MARCO SIDERIUS, FLORIAN F. BAUER, JACKY L. SNOEP, HanS V. WESTERHOFF

Journal:

Journal of Theoretical Biology

Year:

2002

Language:

english

File:

PDF, 239 KB

english, 2002

5

Towards building the silicon cell: A modular approach

Jacky L. Snoep, Frank Bruggeman, Brett G. Olivier, Hans V. Westerhoff

Journal:

Year:

2006

Language:

english

File:

PDF, 237 KB

english, 2006

6

The Silicon Cell initiative: working towards a detailed kinetic description at the cellular level

Journal:

Current Opinion in Biotechnology

Year:

2005

Language:

english

File:

PDF, 612 KB

english, 2005

7

Yeast glycolytic oscillations that are not controlled by a single oscillophore: a new definition of oscillophore strength

Karin A. Reijenga, Yvonne M.G.A. van Megen, Bob W. Kooi, Barbara M. Bakker, Jacky L. Snoep, Henk W. van Verseveld, Hans V. Westerhoff

Journal:

Journal of Theoretical Biology

Year:

2005

Language:

english

File:

PDF, 329 KB

english, 2005

8

Competition for phosphorus between the nitrogen-fixing cyanobacteria Anabaena and Aphanizomenon

W.T.(Pim) De Nobel, Jef Huisman, Jacky L Snoep, Luuc R Mur

Journal:

FEMS Microbiology Ecology

Year:

1997

Language:

english

File:

PDF, 1.11 MB

english, 1997

9

Metabolic control in integrated biochemical systems

Alberto de la Fuente, Jacky L. Snoep, Hans V. Westerhoff, Pedro Mendes

Journal:

Year:

2002

Language:

english

File:

PDF, 354 KB

english, 2002

10

Extensive regulation compromises the extent to which DNA gyrase controls DNA supercoiling and growth rate of Escherichia coli

Peter Ruhdal Jensen, Coen C. van der Weijden, Lars Bogø Jensen, Hans V. Westerhoff, Jacky L. Snoep

Journal:

Year:

1999

Language:

english

File:

PDF, 1.02 MB

english, 1999

11

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

Bas Teusink, Jutta Passarge, Corinne A. Reijenga, Eugenia Esgalhado, Coen C. van der Weijden, Mike Schepper, Michael C. Walsh, Barbara M. Bakker, Karel van Dam, Hans V. Westerhoff, Jacky L. Snoep

Journal:

Year:

2000

Language:

english

File:

PDF, 740 KB

english, 2000

12

DNA supercoiling in Escherichia coli is under tight and subtle homeostatic control, involving gene-expression and metabolic regulation of both topoisomerase I and DNA gyrase

Jacky L. Snoep, Coen C. van der Weijden, Heidi W. Andersen, Hans V. Westerhoff, Peter Ruhdal Jensen

Journal:

Year:

2002

Language:

english

File:

PDF, 191 KB

english, 2002

13

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

Chen Li, Marco Donizelli, Nicolas Rodriguez, Harish Dharuri, Lukas Endler, Vijayalakshmi Chelliah, Lu Li, Enuo He, Arnaud Henry, Melanie I Stefan, Jacky L Snoep, Michael Hucka, Nicolas Le Novère, Cami

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.71 MB

english, 2010

14

Involvement of pyruvate dehydrogenase in product formation in pyruvate-limited anaerobic chemostat cultures ofEnterococcus faecalisNCTC 775

Jacky L. Snoep, M. Joost Teixeira de Mattos, Pieter W. Postma, Oense M. Neijssel

Journal:

Archives of Microbiology

Year:

1990

Language:

english

File:

PDF, 522 KB

english, 1990

15

INTERACTION OF NITROGEN FIXATION AND PHOSPHORUS LIMITATION IN APHANIZOMENON FLOS-AQUAE (CYANOPHYCEAE)

W. T. (Pim) De Nobel, Jacky L. Snoep, Hans V. Westerhoff, Luuc R. Mur

Journal:

Journal of Phycology

Year:

1997

Language:

english

File:

PDF, 688 KB

english, 1997

16

Characterization of the Zymomonas mobilis glucose facilitator gene product (glf) in recombinant Escherichia coli: examination of transport mechanism, kinetics and the role of glucokinase in glucose transport

Corrine Parker, Wendy O. Barnell, Jacky L. Snoep, Lonnie O. Ingram, Tyrrell Conway

Journal:

Molecular Microbiology

Year:

1995

Language:

english

File:

PDF, 1.33 MB

english, 1995

17

DNA supercoiling depends on the phosphorylation potential in Escherichia coli

Marielle van Workum, Silvy J. M. van Dooren, Nienke Oldenburg, Douwe Molenaar, Peter R. Jensen, Jacky L. Snoep, Hans V. Westerhoff'

Journal:

Molecular Microbiology

Year:

1996

Language:

english

File:

PDF, 991 KB

english, 1996

18

Competition for phosphorus between the nitrogen-fixing cyanobacteria Anabaena and Aphanizomenon

W.T.(Pim) De Nobel, Jef Huisman, Jacky L Snoep, Luuc R Mur

Journal:

FEMS Microbiology Ecology

Year:

1997

File:

PDF, 2.21 MB

1997

19

Effect of the energy source on the NADH/NAD ratio and on pyruvate catabolism in anaerobic chemostat cultures of Enterococcus faecalis NCTC 775

Jacky L. Snoep, M. Joost, Teixeira de Mattos, Oense M. Neijssel

Journal:

FEMS Microbiology Letters

Year:

1991

Language:

english

File:

PDF, 221 KB

english, 1991

20

Differences in sensitivity to NADH of purified pyruvate dehydrogenase complexes of Enterococcus faecalis, Lactococcus lactis, Azotobacter vinelandii and Escherichia coli: Implications for their activity in vivo

Jacky L. Snoep, Mark R. de Graef, Adrie H. Westphal, Arie de Kok, M. Joost Teixeira de Mattos, Oense M. Neijssel

Journal:

FEMS Microbiology Letters

Year:

1993

Language:

english

File:

PDF, 350 KB

english, 1993

21

Effect of culture conditions on the NADH/NAD ratio and total amounts of NAD(H) in chemostat cultures of Enterococcus faecalis NCTC 775

Jacky L. Snoep, Mark R. de Graef, M.Joost Teixeira de Mattos, Oense M. Neijssel

Journal:

FEMS Microbiology Letters

Year:

1994

Language:

english

File:

PDF, 309 KB

english, 1994

22

An ffh mutant of Streptococcus mutans is viable and able to physiologically adapt to low pH in continuous culture

Paula J. Crowley, Gunnel Svensäter, Jacky L. Snoep, Arnold S. Bleiweis, L.Jeannine Brady

Journal:

FEMS Microbiology Letters

Year:

2004

Language:

english

File:

PDF, 397 KB

english, 2004

23

Corrigendum to: “An ffh mutant of Streptococcus mutans is viable and able to physiologically adapt to low pH in continuous culture” [FEMS Microbiol. Lett. 234 (2004) 315–324]

Paula J Crowley, Gunnel Svensäter, Jacky L Snoep, Arnold S Bleiweis, L Jeannine Brady

Journal:

FEMS Microbiology Letters

Year:

2004

Language:

english

File:

PDF, 114 KB

english, 2004

24

Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex

Riaan Conradie, Frank J. Bruggeman, Andrea Ciliberto, Attila Csikász-Nagy, Bela Novák, Hans V. Westerhoff, Jacky L. Snoep

Journal:

Year:

2010

Language:

english

File:

PDF, 2.30 MB

english, 2010

25

DNA Supercoiling by Gyrase is Linked to Nucleoid Compaction

Rogier Stuger, Conrad L. Woldringh, Coen C. van der Weijden, Norbert O. E. Vischer, Barbara M. Bakker, Rob J.M. van Spanning, Jacky L. Snoep, Hans V. Weterhoff

Journal:

Molecular Biology Reports

Year:

2002

File:

PDF, 1.53 MB

2002

26

ECA: Control in Ecosystems

Hans V. Westerhoff, Wayne M. Getz, Frank Bruggeman, Jan-Hendrik S. Hofmeyr, Johann M. Rohwer, Jacky L. Snoep

Journal:

Molecular Biology Reports

Year:

2002

File:

PDF, 1.24 MB

2002

27

The Extent to Which ATP Demand Controls the Glycolytic Flux Depends Strongly on the Organism and Conditions for Growth

Brian J. Koebmann, Hans V. Westerhoff, Jacky L. Snoep, Christian Solem, Martin B. Pedersen, Dan Nilsson, Ole Michelsen, Peter R. Jensen

Journal:

Molecular Biology Reports

Year:

2002

File:

PDF, 1.73 MB

2002

28

A mathematical modelling approach to assessing the reliability of biomarkers of glutathione metabolism

Suzanne Geenen, Franco B. du Preez, Michael Reed, H. Frederik Nijhout, J. Gerry Kenna, Ian D. Wilson, Hans V. Westerhoff, Jacky L. Snoep

Journal:

European Journal of Pharmaceutical Sciences

Year:

2012

Language:

english

File:

PDF, 1017 KB

english, 2012

29

Emergence of the silicon human and network targeting drugs

Alexey Kolodkin, Fred C. Boogerd, Nick Plant, Frank J. Bruggeman, Valeri Goncharuk, Jeantine Lunshof, Rafael Moreno-Sanchez, Nilgun Yilmaz, Barbara M. Bakker, Jacky L. Snoep, Rudi Balling, Hans V. Wes

Journal:

European Journal of Pharmaceutical Sciences

Year:

2012

Language:

english

File:

PDF, 522 KB

english, 2012

30

Design principles of nuclear receptor signalling: How complex networking improves signal transduction

Alexey N. Kolodkin, Frank J. Bruggeman, Nick Plant, Martijn J. Moné, Barbara M. Bakker, Moray J. Campbell, Johannes P.T.M. van Leeuwen, Carsten Carlberg, Jacky L. Snoep, Hans V. Westerhoff

Journal:

Year:

2011

Language:

english

File:

PDF, 108 KB

english, 2011

31

Gearing up for a quantitative understanding of cell (dys)function

Journal:

Trends in Biotechnology

Year:

2000

Language:

english

File:

PDF, 63 KB

english, 2000

32

Control analysis of trophic chains

Wayne M. Getz, Hans V. Westerhoff, Jan-Hendrik S. Hofmeyr, Jacky L. Snoep

Journal:

Ecological Modelling

Year:

2003

Language:

english

File:

PDF, 215 KB

english, 2003

33

From steady-state to synchronized yeast glycolytic oscillations II: model validation

Franco B. du Preez, David D. van Niekerk, Jacky L. Snoep

Journal:

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

34

Sustained glycolytic oscillations in individual isolated yeast cells

Anna-Karin Gustavsson, David D. van Niekerk, Caroline B. Adiels, Franco B. du Preez, Mattias Goksör, Jacky L. Snoep

Journal:

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

35

From steady-state to synchronized yeast glycolytic oscillations I: model construction

Franco B. du Preez, David D. van Niekerk, Bob Kooi, Johann M. Rohwer, Jacky L. Snoep

Journal:

Year:

2012

Language:

english

File:

PDF, 627 KB

english, 2012

36

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

Dagmar Waltemath, Richard Adams, Frank T Bergmann, Michael Hucka, Fedor Kolpakov, Andrew K Miller, Ion I Moraru, David Nickerson, Sven Sahle, Jacky L Snoep, Nicolas Le Novère

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 927 KB

english, 2011

37

Isolation and characterisation of the pyruvate dehydrogenase complex of anaerobically grown Enterococcus faecalis NCTC 775

Jacky L. SNOEP, Adrie H. WESTPHAL, Jacques A. E. BENEN, M. Joost TEIXEIRA de MATTOS, Oense M. NEIJSSEL, Arie DE KOK

Journal:

Year:

1992

Language:

english

File:

PDF, 612 KB

english, 1992

38

Corrigendum to: “An ffh mutant of Streptococcus mutans is viable and able to physiologically adapt to low pH in continuous culture” [FEMS Microbiol. Lett. 234 (2004) 315–324]

Paula J Crowley, Gunnel Svensäter, Jacky L Snoep, Arnold S Bleiweis, L Jeannine Brady

Journal:

FEMS Microbiology Letters

Year:

2004

Language:

english

File:

PDF, 114 KB

english, 2004

39

An ffh mutant of Streptococcus mutans is viable and able to physiologically adapt to low pH in continuous culture

Paula J. Crowley, Gunnel Svensäter, Jacky L. Snoep, Arnold S. Bleiweis, L.Jeannine Brady

Journal:

FEMS Microbiology Letters

Year:

2004

Language:

english

File:

PDF, 400 KB

english, 2004

40

A turbo engine with automatic transmission? How to marry chemicomotion to the subtleties and robustness of life

Sarah Koefoed, Marijke F Otten, Brian J Koebmann, Frank J Bruggeman, Barbara M Bakker, Jacky L Snoep, Klaas Krab, Rob J.M van Spanning, Henk W van Verseveld, Peter R Jensen, Johanna G Koster, Hans V W

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2002

Language:

english

File:

PDF, 244 KB

english, 2002

41

Transduction of Intracellular and Intercellular Dynamics in Yeast Glycolytic Oscillations

Wolf, Jana, Passarge, Jutta, Somsen, Oscar J.G., Snoep, Jacky L., Heinrich, Reinhart, Westerhoff, Hans V.

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 134 KB

english, 2000

42

Control of Glycolytic Dynamics by Hexose Transport in Saccharomyces cerevisiae

Reijenga, Karin A., Snoep, Jacky L., Diderich, Jasper A., van Verseveld, Henk W., Westerhoff, Hans V., Teusink, Bas

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 198 KB

english, 2001

43

Control Analysis for Autonomously Oscillating Biochemical Networks

Reijenga, Karin A., Westerhoff, Hans V., Kholodenko, Boris N., Snoep, Jacky L.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 139 KB

english, 2002

44

Systems biology tools for toxicology

Suzanne Geenen, Peter Neal Taylor, Jacky L. Snoep, Ian D. Wilson, J. Gerry Kenna, Hans V. Westerhoff

Journal:

Archives of Toxicology

Year:

2012

Language:

english

File:

PDF, 907 KB

english, 2012

45

Trade-off of dynamic fragility but not of robustness in metabolic pathways in silico

Quinton-Tulloch, Mark J., Bruggeman, Frank J., Snoep, Jacky L., Westerhoff, Hans V.

Journal:

Year:

2013

Language:

english

File:

PDF, 262 KB

english, 2013

46

Determining Enzyme Kinetics for Systems Biology with Nuclear Magnetic Resonance Spectroscopy

Eicher, Johann, Snoep, Jacky, Rohwer, Johann

Journal:

Year:

2012

Language:

english

File:

PDF, 3.36 MB

english, 2012

47

Glutathione metabolism modeling: A mechanism for liver drug-robustness and a new biomarker strategy

Geenen, Suzanne, du Preez, Franco B., Snoep, Jacky L., Foster, Alison J., Sarda, Sunil, Kenna, J. Gerry, Wilson, Ian D., Westerhoff, Hans V.

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2013

Language:

english

File:

PDF, 2.71 MB

english, 2013

48

Heterogeneity of glycolytic oscillatory behaviour in individual yeast cells

Gustavsson, Anna-Karin, van Niekerk, David D., Adiels, Caroline B., Goksör, Mattias, Snoep, Jacky L.

Journal:

Year:

2014

Language:

english

File:

PDF, 596 KB

english, 2014

49

Births, Marriages, and Deaths.

Gustavsson, Anna-Karin, van Niekerk, David D., Adiels, Caroline B., Goksör, Mattias, Snoep, Jacky L.

Journal:

Year:

1918

Language:

english

File:

PDF, 205 KB

english, 1918

50

Variation in pantothenate kinase type determines the pantothenamide mode of action and impacts on coenzyme A salvage biosynthesis

de Villiers, Marianne, Barnard, Leanne, Koekemoer, Lizbé, Snoep, Jacky L., Strauss, Erick

Journal:

Year:

2014

Language:

english

File:

PDF, 3.19 MB

english, 2014

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